Package: ggseqlogo 0.1

Omar Wagih

ggseqlogo: A 'ggplot2' Extension for Drawing Publication-Ready Sequence Logos

The extensive range of functions provided by this package makes it possible to draw highly versatile sequence logos. Features include, but not limited to, modifying colour schemes and fonts used to draw the logo, generating multiple logo plots, and aiding the visualisation with annotations. Sequence logos can easily be combined with other plots 'ggplot2' plots.

Authors:Omar Wagih

ggseqlogo_0.1.tar.gz
ggseqlogo_0.1.zip(r-4.5)ggseqlogo_0.1.zip(r-4.4)ggseqlogo_0.1.zip(r-4.3)
ggseqlogo_0.1.tgz(r-4.4-any)ggseqlogo_0.1.tgz(r-4.3-any)
ggseqlogo_0.1.tar.gz(r-4.5-noble)ggseqlogo_0.1.tar.gz(r-4.4-noble)
ggseqlogo_0.1.tgz(r-4.4-emscripten)ggseqlogo_0.1.tgz(r-4.3-emscripten)
ggseqlogo.pdf |ggseqlogo.html
ggseqlogo/json (API)

# Install 'ggseqlogo' in R:
install.packages('ggseqlogo', repos = c('https://blaserlab.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/omarwagih/ggseqlogo/issues

Datasets:
  • pfms_dna - List of position frequency matrices for transcription factors
  • seqs_aa - List of aligned kinase-substrate binding sequences
  • seqs_dna - List of aligned transcription factor binding sequences

On CRAN:

6 exports 200 stars 6.73 score 28 dependencies 12 dependents 49 mentions 2.6k downloads

Last updated 5 months agofrom:6658a39b6e

Exports:geom_logoggseqlogolist_col_schemeslist_fontsmake_col_schemetheme_logo

Dependencies:clicolorspacefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerrlangscalestibbleutf8vctrsviridisLitewithr

ggseqlogo introduction

Rendered fromggseqlogo_introduction.Rmdusingknitr::rmarkdownon Jul 15 2024.

Last update: 2023-11-26
Started: 2017-06-13