Package: ggseqlogo 0.1
ggseqlogo: A 'ggplot2' Extension for Drawing Publication-Ready Sequence Logos
The extensive range of functions provided by this package makes it possible to draw highly versatile sequence logos. Features include, but not limited to, modifying colour schemes and fonts used to draw the logo, generating multiple logo plots, and aiding the visualisation with annotations. Sequence logos can easily be combined with other plots 'ggplot2' plots.
Authors:
ggseqlogo_0.1.tar.gz
ggseqlogo_0.1.zip(r-4.5)ggseqlogo_0.1.zip(r-4.4)ggseqlogo_0.1.zip(r-4.3)
ggseqlogo_0.1.tgz(r-4.4-any)ggseqlogo_0.1.tgz(r-4.3-any)
ggseqlogo_0.1.tar.gz(r-4.5-noble)ggseqlogo_0.1.tar.gz(r-4.4-noble)
ggseqlogo_0.1.tgz(r-4.4-emscripten)ggseqlogo_0.1.tgz(r-4.3-emscripten)
ggseqlogo.pdf |ggseqlogo.html✨
ggseqlogo/json (API)
# Install 'ggseqlogo' in R: |
install.packages('ggseqlogo', repos = c('https://blaserlab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/omarwagih/ggseqlogo/issues
Last updated 7 months agofrom:6658a39b6e. Checks:OK: 7. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Aug 15 2024 |
R-4.5-win | OK | Aug 15 2024 |
R-4.5-linux | OK | Aug 15 2024 |
R-4.4-win | OK | Aug 15 2024 |
R-4.4-mac | OK | Aug 15 2024 |
R-4.3-win | OK | Aug 15 2024 |
R-4.3-mac | OK | Aug 15 2024 |
Exports:geom_logoggseqlogolist_col_schemeslist_fontsmake_col_schemetheme_logo
Dependencies:clicolorspacefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerrlangscalestibbleutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Plots sequence logo as a layer on ggplot | geom_logo |
Quick sequence logo plot | ggseqlogo |
List color schemes available in ggseqlogo | list_col_schemes |
List fonts available in ggseqlogo | list_fonts |
Create new sequence logo color scheme | make_col_scheme |
List of position frequency matrices for transcription factors | pfms_dna |
List of aligned kinase-substrate binding sequences | seqs_aa |
List of aligned transcription factor binding sequences | seqs_dna |
ggseqlogo custom theme | theme_logo |