Package: ggseqlogo 0.1

Omar Wagih

ggseqlogo: A 'ggplot2' Extension for Drawing Publication-Ready Sequence Logos

The extensive range of functions provided by this package makes it possible to draw highly versatile sequence logos. Features include, but not limited to, modifying colour schemes and fonts used to draw the logo, generating multiple logo plots, and aiding the visualisation with annotations. Sequence logos can easily be combined with other plots 'ggplot2' plots.

Authors:Omar Wagih

ggseqlogo_0.1.tar.gz
ggseqlogo_0.1.zip(r-4.7)ggseqlogo_0.1.zip(r-4.6)ggseqlogo_0.1.zip(r-4.5)
ggseqlogo_0.1.tgz(r-4.6-any)ggseqlogo_0.1.tgz(r-4.5-any)
ggseqlogo_0.1.tar.gz(r-4.7-any)ggseqlogo_0.1.tar.gz(r-4.6-any)
ggseqlogo_0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
ggseqlogo/json (API)

# Install 'ggseqlogo' in R:
install.packages('ggseqlogo', repos = c('https://blaserlab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/omarwagih/ggseqlogo/issues

Datasets:
  • pfms_dna - List of position frequency matrices for transcription factors
  • seqs_aa - List of aligned kinase-substrate binding sequences
  • seqs_dna - List of aligned transcription factor binding sequences

On CRAN:

Conda:

11.76 score 227 stars 10 packages 1.1k scripts 7.8k downloads 49 mentions 6 exports 17 dependencies

Last updated from:af4dc0c41a. Checks:7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE106
source / vignettesOK159
linux-release-x86_64NOTE119
macos-release-arm64NOTE94
macos-oldrel-arm64NOTE92
windows-develNOTE110
windows-releaseNOTE81
windows-oldrelNOTE79
wasm-releaseOK102

Exports:geom_logoggseqlogolist_col_schemeslist_fontsmake_col_schemetheme_logo

Dependencies:clicpp11farverggplot2gluegtableisobandlabelinglifecycleR6RColorBrewerrlangS7scalesvctrsviridisLitewithr

ggseqlogo introduction

Omar Wagih

Rendered fromggseqlogo_introduction.Rmdusingknitr::rmarkdownon May 15 2026.

Last update: 2023-11-26
Started: 2017-06-13