{ "_id": "6a1f2e8ab401979e73426ac8", "Package": "ggseqlogo", "Type": "Package", "Title": "A 'ggplot2' Extension for Drawing Publication-Ready Sequence\nLogos", "Version": "0.1", "Date": "2017-07-25", "Author": "Omar Wagih", "Maintainer": "Omar Wagih ", "Description": "The extensive range of functions provided by this package\nmakes it possible to draw highly versatile sequence logos.\nFeatures include, but not limited to, modifying colour schemes\nand fonts used to draw the logo, generating multiple logo\nplots, and aiding the visualisation with annotations. Sequence\nlogos can easily be combined with other plots 'ggplot2' plots.", "License": "LGPL", "URL": "https://github.com/omarwagih/ggseqlogo", "BugReports": "https://github.com/omarwagih/ggseqlogo/issues", "Encoding": "latin1", "RoxygenNote": "6.0.1", "VignetteBuilder": "knitr", "Repository": "https://blaserlab.r-universe.dev", "Date/Publication": "2026-02-14 06:17:47 UTC", "RemoteUrl": "https://github.com/omarwagih/ggseqlogo", "RemoteRef": "HEAD", "RemoteSha": "af4dc0c41a863691d8dfe2be4bf559b74f5ab986", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-15 09:27:31 UTC", "User": "root" }, "MD5sum": "aef41d6096cbe7827b8828193197346d", "_user": "blaserlab", "_type": "src", "_file": "ggseqlogo_0.1.tar.gz", "_fileid": "60bee7c862491d0cc07c0e09220bd24dd7d258aefe6ece5863a2d2c290630e03", "_filesize": 835881, "_sha256": "60bee7c862491d0cc07c0e09220bd24dd7d258aefe6ece5863a2d2c290630e03", "_created": "2026-05-15T09:27:31.000Z", "_published": "2026-06-02T19:27:06.871Z", "_distro": "noble", "_jobs": [ { "job": 79154338602, "time": 106, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7014069371" }, { "job": 79154338915, "time": 119, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7014073313" }, { "job": 79154338610, "time": 92, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7014065373" }, { "job": 79154338283, "time": 94, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7014066045" }, { "job": 79154337556, "time": 159, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7014037810" }, { "job": 79154337771, "time": 102, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7367725752" }, { "job": 79154338736, "time": 110, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7014070513" }, { "job": 79154338540, "time": 79, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7014062064" }, { "job": 79154338715, "time": 81, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7014062296" } ], "_buildurl": "https://github.com/r-universe/blaserlab/actions/runs/25910446252", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/omarwagih/ggseqlogo", "_commit": { "id": "af4dc0c41a863691d8dfe2be4bf559b74f5ab986", "author": "Omar Wagih ", "committer": "GitHub ", "message": "Update README.md", "time": 1771049867 }, "_maintainer": { "name": "Omar Wagih", "email": "omarwagih@gmail.com", "login": "omarwagih", "uuid": 1717767 }, "_registered": true, "_dependencies": [ { "package": "ggplot2", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "omarwagih", "_selfowned": false, "_usedby": 10, "_updates": [ { "week": "2026-07", "n": 1 } ], "_tags": [], "_stars": 227, "_contributors": [ { "user": "omarwagih", "count": 37, "uuid": 1717767 }, { "user": "cvaske", "count": 1, "uuid": 100392 }, { "user": "aviezerl", "count": 1, "uuid": 18175550 } ], "_userbio": { "uuid": 62366303, "type": "user", "name": "Brad Blaser", "description": "Experimental Hematologist and Fish Fancier" }, "_downloads": { "count": 7840, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/ggseqlogo" }, "_mentions": 49, "_devurl": "https://github.com/omarwagih/ggseqlogo", "_searchresults": 1076, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/ggseqlogo.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/omarwagih/ggseqlogo", "_realowner": "omarwagih", "_cranurl": true, "_releases": [ { "version": "0.0.1", "date": "2017-06-13" }, { "version": "0.1", "date": "2017-07-25" }, { "version": "0.2", "date": "2024-02-09" }, { "version": "0.2.2", "date": "2025-12-22" } ], "_exports": [ "geom_logo", "ggseqlogo", "list_col_schemes", "list_fonts", "make_col_scheme", "theme_logo" ], "_datasets": [ { "name": "pfms_dna", "title": "List of position frequency matrices for transcription factors", "object": "ggseqlogo_sample", "file": "ggseqlogo_sample.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "seqs_aa", "title": "List of aligned kinase-substrate binding sequences", "object": "ggseqlogo_sample", "file": "ggseqlogo_sample.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true }, { "name": "seqs_dna", "title": "List of aligned transcription factor binding sequences", "object": "ggseqlogo_sample", "file": "ggseqlogo_sample.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "geom_logo", "title": "Plots sequence logo as a layer on ggplot", "topics": [ "geom_logo" ] }, { "page": "ggseqlogo", "title": "Quick sequence logo plot", "topics": [ "ggseqlogo" ] }, { "page": "list_col_schemes", "title": "List color schemes available in ggseqlogo", "topics": [ "list_col_schemes" ] }, { "page": "list_fonts", "title": "List fonts available in ggseqlogo", "topics": [ "list_fonts" ] }, { "page": "make_col_scheme", "title": "Create new sequence logo color scheme", "topics": [ "make_col_scheme" ] }, { "page": "pfms_dna", "title": "List of position frequency matrices for transcription factors", "topics": [ "pfms_dna" ] }, { "page": "seqs_aa", "title": "List of aligned kinase-substrate binding sequences", "topics": [ "seqs_aa" ] }, { "page": "seqs_dna", "title": "List of aligned transcription factor binding sequences", "topics": [ "seqs_dna" ] }, { "page": "theme_logo", "title": "ggseqlogo custom theme", "topics": [ "theme_logo" ] } ], "_readme": "https://github.com/omarwagih/ggseqlogo/raw/HEAD/README.md", "_rundeps": [ "cli", "cpp11", "farver", "ggplot2", "glue", "gtable", "isoband", "labeling", "lifecycle", "R6", "RColorBrewer", "rlang", "S7", "scales", "vctrs", "viridisLite", "withr" ], "_vignettes": [ { "source": "ggseqlogo_introduction.Rmd", "filename": "ggseqlogo_introduction.html", "title": "ggseqlogo introduction", "author": "Omar Wagih", "engine": "knitr::rmarkdown", "headings": [], "created": "2017-06-13 10:26:35", "modified": "2023-11-26 16:17:17", "commits": 2 } ], "_score": 11.759275445927594, "_indexed": false, "_nocasepkg": "ggseqlogo", "_universes": [ "blaserlab" ], "_indexurl": "https://omarwagih.r-universe.dev/ggseqlogo", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1", "date": "2026-05-15T09:29:10.000Z", "distro": "noble", "commit": "af4dc0c41a863691d8dfe2be4bf559b74f5ab986", "fileid": "6e7f938a259e431cd11b44de57a4c6e75202e509605b4c43c32caa3e7207172d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/blaserlab/actions/runs/25910446252" }, { "r": "4.6.0", "os": "linux", "version": "0.1", "date": "2026-05-15T09:29:24.000Z", "distro": "noble", "commit": "af4dc0c41a863691d8dfe2be4bf559b74f5ab986", "fileid": "237750a440331b9c6143eb55f103d7a0511a964a782816661c8ba2f305677a38", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/blaserlab/actions/runs/25910446252" }, { "r": "4.5.3", "os": "mac", "version": "0.1", "date": "2026-05-15T09:29:02.000Z", "commit": "af4dc0c41a863691d8dfe2be4bf559b74f5ab986", "fileid": "257e0cf6cd9ae42e079ad975c77c8fcb2c9dcdae2806fa35cb55fd0cc7e27ea6", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/blaserlab/actions/runs/25910446252" }, { "r": "4.6.0", "os": "mac", "version": "0.1", "date": "2026-05-15T09:29:01.000Z", "commit": "af4dc0c41a863691d8dfe2be4bf559b74f5ab986", "fileid": "30408322842cf8707241dd78552d6c9a23802d330589f5a4a12e56576b554b93", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/blaserlab/actions/runs/25910446252" }, { "r": "4.7.0", "os": "win", "version": "0.1", "date": "2026-05-15T09:28:53.000Z", "commit": "af4dc0c41a863691d8dfe2be4bf559b74f5ab986", "fileid": "a38fb0dc7b464ca54975e0a8ec35cf61b30992914c291ab207578b2fcbb4813b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/blaserlab/actions/runs/25910446252" }, { "r": "4.5.3", "os": "win", "version": "0.1", "date": "2026-05-15T09:28:39.000Z", "commit": "af4dc0c41a863691d8dfe2be4bf559b74f5ab986", "fileid": "70730896d55ffb22c767172f459c2746f7463121b000eeb9e68cf9e4448b5afb", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/blaserlab/actions/runs/25910446252" }, { "r": "4.6.0", "os": "win", "version": "0.1", "date": "2026-05-15T09:28:41.000Z", "commit": "af4dc0c41a863691d8dfe2be4bf559b74f5ab986", "fileid": "b8765a8473917ece71d65dad3a5468dd87d1209e574218669f8d25c4d2a3d34f", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/blaserlab/actions/runs/25910446252" }, { "r": "4.6.0", "os": "wasm", "version": "0.1", "date": "2026-06-02T19:26:49.000Z", "commit": "af4dc0c41a863691d8dfe2be4bf559b74f5ab986", "fileid": "7e4edc029e0e4ca88c5ca3e8b978ad9c83b3a458904f817a23784a9d73c1f976", "status": "success", "buildurl": "https://github.com/r-universe/blaserlab/actions/runs/25910446252" } ] }