Package: blaseRtools 0.0.0.9163
blaseRtools: R Tools for Blaser Lab Data Analysis
This is a repository of R tools for Single Cell RNA seq and other lab data analysis functions.
Authors:
blaseRtools_0.0.0.9163.tar.gz
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blaseRtools.pdf |blaseRtools.html✨
blaseRtools/json (API)
NEWS
# Install 'blaseRtools' in R: |
install.packages('blaseRtools', repos = c('https://blaserlab.r-universe.dev', 'https://cloud.r-project.org')) |
The latest version of this package failed to build. Look at thebuild logs for more information.
Bug tracker:https://github.com/blaserlab/blasertools/issues
Last updated 3 months agofrom:4c6d9427f0. Checks:OK: 1. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Jun 14 2024 |
Exports:%notin%add_cds_factor_columnsApeApe.DNAApe.fastaApe.fimoApe.grangesApe.saveApe.setFeaturesbb_aggregatebb_alignbb_annotate_npcbb_blind_imagesbb_buff_grangesbb_cds_annobb_cds_heatmapbb_cellchatbb_cellchat_heatmapbb_cellmetabb_cite_umapbb_cluster_representationbb_cluster_representation2bb_doubletfinderbb_extract_msigbb_fix_file_pathbb_fragment_replacementbb_gene_dotplotbb_gene_modulesbb_gene_pseudotimebb_gene_umapbb_gene_violinplotbb_genebubblesbb_goenrichmentbb_goscatterbb_gosummarybb_load_tenx_h5bb_load_tenx_targzbb_make_ape_genomicbb_make_ape_transcriptbb_makeTracebb_metafeaturebb_monocle_regressionbb_monocle_regression_betterbb_parseapebb_plot_genes_in_pseudotimebb_plot_rowData_colbb_plot_trace_axisbb_plot_trace_databb_plot_trace_linksbb_plot_trace_modelbb_plot_trace_peaksbb_plotfootprintbb_print_full_statsbb_promoter_overlapbb_pseudobulk_mfbb_pseudotimebb_qcbb_read_bambb_read_narrowpeakbb_rejoinbb_remove_dupesbb_rowmetabb_seurat_annobb_split_atacbb_split_citeseqbb_tbl_to_coldatabb_tbl_to_matrixbb_tbl_to_rowdatabb_tripleclusterbb_unblind_imagesbb_var_umapCOMMENTSdata_median_sedata_summary_mean_sddata_summary_mean_sedata_summary_median_iqrdata_summary_median_madFEATURESfilter_cdsgeom_split_violingranges_to_featuresLOCUSnormalize_batchseshowTraceTrace.dataTrace.gene_modelTrace.linksTrace.peaksTrace.plot_rangeTrace.setDataTrace.setLinksTrace.setpeaksTrace.setRange
Dependencies:abindannotateAnnotationDbiashraskpassassertthatbackportsbase64encbatchelorbeachmatbeeswarmBHbiglmBiobaseBiocGenericsBiocIOBiocManagerBiocNeighborsBiocParallelBiocSingularBiostringsbitbit64bitopsblaseRdatablaseRtemplatesblobbootbrewbriobroomBSgenomeBSgenome.Drerio.UCSC.danRer11BSgenome.Hsapiens.UCSC.hg38bslibcachemCairocallrcarcarDatacaToolsCellChatcellrangercirclizeclassclassIntclicliprclueclustercodacodetoolscolorspacecommonmarkComplexHeatmapconflictedcorrplotcowplotcpp11crayoncredentialscrosstalkcurldata.tableDBIdbplyrDelayedArrayDelayedMatrixStatsdeldirdescDESeq2devtoolsdiffobjdigestdoParalleldotCall64DoubletFinderdownlitdplyrdqrngdtplyre1071edgeRellipsisetrunctevaluateexpmfansifarverfastDummiesfastmapfastmatchfieldsfilelockfitdistrplusFNNfontawesomeforcatsforeachformatRfsfurrrfutile.loggerfutile.optionsfuturefuture.applygarglegenefiltergeneplottergenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesgertGetoptLongggalluvialggbeeswarmggforceggnetworkggplot2ggpubrggrastrggrepelggridgesggsciggsignifggtextghgitcredsGlobalOptionsglobalsglueGO.dbgoftestgoogledrivegooglesheets4GOSemSimgplotsgraphgridBasegridExtragridtextgrrgtablegtoolshavenHDF5Arrayhdf5rherehexbinhighrhmshtmltoolshtmlwidgetshttpuvhttrhttr2huxtableicaidsigraphiniinvgammaIRangesirlbaisobanditeratorsjpegjquerylibjsonliteKEGGRESTKernSmoothknitrlabelinglambda.rlaterlatticelazyevalleidenleidenbaselifecyclelimmalistenvlme4lmtestlocfitlubridatemagrittrmapsmarkdownMASSMatrixMatrixGenericsMatrixModelsmatrixStatsmemoisemgcvmimeminiUIminqamixsqpmodelrmonocle3munsellnetworknlmenloptrNLPNMFnnetnumDerivopensslorg.Dr.eg.dborg.Hs.eg.dborg.Mm.eg.dbpakparallellypatchworkpbapplypbkrtestpbmcapplypheatmappillarpkgbuildpkgcachepkgconfigpkgdownpkgloadplogrplotlyplyrpngpolyclippolynompraiseprettyunitsprocessxprofvisprogressprogressrpromisespromptproxypspsclpurrrquantregR.methodsS3R.ooR.utilsR6raggRANNrappdirsrcmdcheckRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppMLRcppProgressRcppRollRcppTOMLRCurlreadrreadxlregistryrematchrematch2remotesrenvreprexreshape2ResidualMatrixrestfulrreticulaterhdf5rhdf5filtersRhdf5libRhpcBLASctlRhtslibrjsonrlangrmarkdownrngtoolsROCRroxygen2rprojrootrrvgorsampleRsamtoolsRSpectraRSQLiterstatixrstudioapirsvdrtracklayerRtsnerversionsrvests2S4ArraysS4VectorssassScaledMatrixscalesscaterscattermoresctransformscuttleselectrsessioninfoSeuratSeuratDiskSeuratObjectsfshapeshinySignacSingleCellExperimentsitmoslamslidersnasnowsourcetoolsspspamSparseArraySparseMsparseMatrixStatsspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.utilsspDataspdepspeedglmSQUAREMstatmodstatnet.commonstringistringrSummarizedExperimentsurvivalsvglitesyssystemfontstensortestthattextshapingtibbletidyrtidyselecttidyversetimechangetinytextmtopGOtreemaptruncnormtweenrTxDb.Drerio.UCSC.danRer11.ensGeneTxDb.Hsapiens.UCSC.hg38.knownGenetzdbUCSC.utilsumapunitsurlcheckerusethisutf8uuiduwotvctrsviporviridisviridisLitevroomwaldowarpwhiskerwithrwkwordcloudxfunXMLxml2xopenxtableXVectoryamlyulab.utilszipzlibbioczoo