Package: blaseRdata 0.0.0.9013
blaseRdata: Supporting Data for the blaseRtools Package
What the package does (one paragraph).
Authors:
blaseRdata_0.0.0.9013.tar.gz
blaseRdata_0.0.0.9013.zip(r-4.5)blaseRdata_0.0.0.9013.zip(r-4.4)blaseRdata_0.0.0.9013.zip(r-4.3)
blaseRdata_0.0.0.9013.tgz(r-4.4-any)blaseRdata_0.0.0.9013.tgz(r-4.3-any)
blaseRdata_0.0.0.9013.tar.gz(r-4.5-noble)blaseRdata_0.0.0.9013.tar.gz(r-4.4-noble)
blaseRdata_0.0.0.9013.tgz(r-4.4-emscripten)blaseRdata_0.0.0.9013.tgz(r-4.3-emscripten)
blaseRdata.pdf |blaseRdata.html✨
blaseRdata/json (API)
NEWS
# Install 'blaseRdata' in R: |
install.packages('blaseRdata', repos = c('https://blaserlab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/blaserlab/blaserdata/issues
- Drerio - Drerio
- Hsapiens - Hsapiens
- dr11_remove_genes - Genes to Remove from ScRNA-seq Analysis: Zebrafish
- dr11_tss - Zebrafish Gene TSS
- hg38_granges - Human Gene Model
- hg38_granges_reduced - Reduced Human Gene Model
- hg38_remove_genes - Genes to Remove from ScRNA-seq Analysis: Human
- hg38_tss - Human Gene TSS
- meme - Jaspar 2020 TF Motifs
- mm39_remove_genes - Genes to Remove from ScRNA-seq Analysis: Mouse
- msigdb_geneset_metadata - Broad Institute MSIGDB Gene Set Metadata
- msigdb_genesets - Broad Institute MSIGDB Gene Sets
- vig_qc_res - Vignette QC Results
- vignette_cds - ScRNA-seq Vignette CDS
- vignette_pseudobulk_res - BlaseRtools ScRNA-seq Vignette CDS Pseudobulk Results
- vignette_top_markers - BlaseRtools ScRNA-seq Vignette CDS Top Markers
- wordhash - Wordlist Hashtable
- zfin_granges - Zebrafish Gene Model
- zfin_granges_reduced - Reduced Zebrafish Gene Model
Last updated 5 months agofrom:8ddc401c80. Checks:OK: 1 WARNING: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Aug 25 2024 |
R-4.5-win | WARNING | Aug 25 2024 |
R-4.5-linux | WARNING | Aug 25 2024 |
R-4.4-win | WARNING | Aug 25 2024 |
R-4.4-mac | WARNING | Aug 25 2024 |
R-4.3-win | WARNING | Aug 25 2024 |
R-4.3-mac | WARNING | Aug 25 2024 |
Exports:
Dependencies:abindaskpassassertthatbase64encbatchelorbeachmatbeeswarmBHbiglmBiobaseBiocGenericsBiocIOBiocNeighborsBiocParallelBiocSingularBiostringsbitopsbootBSgenomebslibcachemCairoclassclassIntclicodetoolscolorspacecommonmarkcpp11crayoncrosstalkcurldata.tableDBIDelayedArrayDelayedMatrixStatsdeldirdigestdplyrdqrnge1071evaluatefansifarverfastmapFNNfontawesomeformatRfsfurrrfutile.loggerfutile.optionsfuturegenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesggbeeswarmggplot2ggrastrggrepelglobalsgluegridExtragrrgtableHDF5ArrayhighrhtmltoolshtmlwidgetshttpuvhttrigraphIRangesirlbaisobandjquerylibjsonliteKernSmoothknitrlabelinglambda.rlaterlatticelazyevalleidenbaselifecyclelimmalistenvlme4lmtestmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeminqamonocle3munsellnlmenloptropensslparallellypbapplypbmcapplypheatmappillarpkgconfigplotlyplyrpngpromisesproxypsclpurrrR6raggRANNrappdirsRColorBrewerRcppRcppAnnoyRcppEigenRcppHNSWRcppProgressRCurlreshape2ResidualMatrixrestfulrrhdf5rhdf5filtersRhdf5libRhpcBLASctlRhtslibrjsonrlangrmarkdownrsampleRsamtoolsRSpectrarsvdrtracklayerRtsnes2S4ArraysS4VectorssassScaledMatrixscalesscuttlesfshinySingleCellExperimentsitmoslamslidersnowsourcetoolsspSparseArraysparseMatrixStatsspDataspdepspeedglmstatmodstringistringrSummarizedExperimentsyssystemfontstextshapingtibbletidyrtidyselecttinytexUCSC.utilsunitsutf8uwotvctrsviporviridisviridisLitewarpwithrwkxfunXMLxtableXVectoryamlzlibbioczoo
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Genes to Remove from ScRNA-seq Analysis: Zebrafish | dr11_remove_genes |
Zebrafish Gene TSS | dr11_tss |
Drerio | Drerio |
Human Gene Model | hg38_granges |
Reduced Human Gene Model | hg38_granges_reduced |
Genes to Remove from ScRNA-seq Analysis: Human | hg38_remove_genes |
Human Gene TSS | hg38_tss |
Hsapiens | Hsapiens |
Jaspar 2020 TF Motifs | meme |
Genes to Remove from ScRNA-seq Analysis: Mouse | mm39_remove_genes |
Broad Institute MSIGDB Gene Set Metadata | msigdb_geneset_metadata |
Broad Institute MSIGDB Gene Sets | msigdb_genesets |
Vignette QC Results | vig_qc_res |
ScRNA-seq Vignette CDS | vignette_cds |
BlaseRtools ScRNA-seq Vignette CDS Pseudobulk Results | vignette_pseudobulk_res |
BlaseRtools ScRNA-seq Vignette CDS Top Markers | vignette_top_markers |
Wordlist Hashtable | wordhash |
Zebrafish Gene Model | zfin_granges |
Reduced Zebrafish Gene Model | zfin_granges_reduced |