Package: blaseRdata 0.0.0.9013

blaseRdata: Supporting Data for the blaseRtools Package

What the package does (one paragraph).

Authors:Brad Blaser [aut, cre]

blaseRdata_0.0.0.9013.tar.gz
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blaseRdata.pdf |blaseRdata.html✨
blaseRdata/json (API)
NEWS

# Install 'blaseRdata' in R:

install.packages('blaseRdata', repos = c('https://blaserlab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/blaserlab/blaserdata/issues

Datasets:

Drerio - Drerio
Hsapiens - Hsapiens
dr11_remove_genes - Genes to Remove from ScRNA-seq Analysis: Zebrafish
dr11_tss - Zebrafish Gene TSS
hg38_granges - Human Gene Model
hg38_granges_reduced - Reduced Human Gene Model
hg38_remove_genes - Genes to Remove from ScRNA-seq Analysis: Human
hg38_tss - Human Gene TSS
meme - Jaspar 2020 TF Motifs
mm39_remove_genes - Genes to Remove from ScRNA-seq Analysis: Mouse
msigdb_geneset_metadata - Broad Institute MSIGDB Gene Set Metadata
msigdb_genesets - Broad Institute MSIGDB Gene Sets
vig_qc_res - Vignette QC Results
vignette_cds - ScRNA-seq Vignette CDS
vignette_pseudobulk_res - BlaseRtools ScRNA-seq Vignette CDS Pseudobulk Results
vignette_top_markers - BlaseRtools ScRNA-seq Vignette CDS Top Markers
wordhash - Wordlist Hashtable
zfin_granges - Zebrafish Gene Model
zfin_granges_reduced - Reduced Zebrafish Gene Model

On CRAN:

2.00 score 5 scripts 0 exports 198 dependencies

Last updated 8 months agofrom:8ddc401c80. Checks:OK: 1 WARNING: 6. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 23 2024
R-4.5-win	WARNING	Nov 23 2024
R-4.5-linux	WARNING	Nov 23 2024
R-4.4-win	WARNING	Nov 23 2024
R-4.4-mac	WARNING	Nov 23 2024
R-4.3-win	WARNING	Nov 23 2024
R-4.3-mac	WARNING	Oct 24 2024

Exports:

Dependencies:abind askpass assertthat assorthead base64enc batchelor beachmat beeswarm BH biglm Biobase BiocGenerics BiocIO BiocNeighbors BiocParallel BiocSingular Biostrings bitops boot BSgenome bslib cachem Cairo class classInt cli codetools colorspace commonmark cpp11 crayon crosstalk curl data.table DBI DelayedArray DelayedMatrixStats deldir digest dplyr dqrng e1071 evaluate fansi farver fastmap FNN fontawesome formatR fs furrr futile.logger futile.options future generics GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicRanges ggbeeswarm ggplot2 ggrastr ggrepel globals glue gridExtra grr gtable HDF5Array highr htmltools htmlwidgets httpuv httr igraph IRanges irlba isoband jquerylib jsonlite KernSmooth knitr labeling lambda.r later lattice lazyeval leidenbase lifecycle limma listenv lme4 lmtest magrittr MASS Matrix MatrixGenerics matrixStats memoise mgcv mime minqa monocle3 munsell nlme nloptr openssl parallelly pbapply pbmcapply pheatmap pillar pkgconfig plotly plyr png promises proxy pscl purrr R6 ragg RANN rappdirs RColorBrewer Rcpp RcppAnnoy RcppEigen RcppHNSW RcppProgress RCurl reshape2 ResidualMatrix restfulr rhdf5 rhdf5filters Rhdf5lib RhpcBLASctl Rhtslib rjson rlang rmarkdown rsample Rsamtools RSpectra rsvd rtracklayer Rtsne s2 S4Arrays S4Vectors sass ScaledMatrix scales scuttle sf shiny SingleCellExperiment sitmo slam slider snow sourcetools sp SparseArray sparseMatrixStats spData spdep speedglm statmod stringi stringr SummarizedExperiment sys systemfonts textshaping tibble tidyr tidyselect tinytex UCSC.utils units utf8 uwot vctrs vipor viridis viridisLite warp withr wk xfun XML xtable XVector yaml zlibbioc zoo

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Genes to Remove from ScRNA-seq Analysis: Zebrafish	dr11_remove_genes
Zebrafish Gene TSS	dr11_tss
Drerio	Drerio
Human Gene Model	hg38_granges
Reduced Human Gene Model	hg38_granges_reduced
Genes to Remove from ScRNA-seq Analysis: Human	hg38_remove_genes
Human Gene TSS	hg38_tss
Hsapiens	Hsapiens
Jaspar 2020 TF Motifs	meme
Genes to Remove from ScRNA-seq Analysis: Mouse	mm39_remove_genes
Broad Institute MSIGDB Gene Set Metadata	msigdb_geneset_metadata
Broad Institute MSIGDB Gene Sets	msigdb_genesets
Vignette QC Results	vig_qc_res
ScRNA-seq Vignette CDS	vignette_cds
BlaseRtools ScRNA-seq Vignette CDS Pseudobulk Results	vignette_pseudobulk_res
BlaseRtools ScRNA-seq Vignette CDS Top Markers	vignette_top_markers
Wordlist Hashtable	wordhash
Zebrafish Gene Model	zfin_granges
Reduced Zebrafish Gene Model	zfin_granges_reduced