Package: loupeR 1.1.4

Eric Siegel

loupeR: Converts Seurat objects to 10x Genomics Loupe files

Converts Seurat objects to 10x Genomics Loupe files. This is a second line to make the package checker not complain.

Authors:Eric Siegel [aut, cre]

loupeR_1.1.4.tar.gz
loupeR_1.1.4.zip(r-4.5)loupeR_1.1.4.zip(r-4.4)loupeR_1.1.4.zip(r-4.3)
loupeR_1.1.4.tgz(r-4.5-any)loupeR_1.1.4.tgz(r-4.4-any)loupeR_1.1.4.tgz(r-4.3-any)
loupeR_1.1.4.tar.gz(r-4.5-noble)loupeR_1.1.4.tar.gz(r-4.4-noble)
loupeR_1.1.4.tgz(r-4.4-emscripten)
loupeR.pdf |loupeR.html
loupeR/json (API)

# Install 'loupeR' in R:
install.packages('loupeR', repos = c('https://blaserlab.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/10xgenomics/louper/issues

On CRAN:

10xgenomicssingle-cell-genomics

5.92 score 107 stars 52 scripts 15 exports 149 dependencies

Last updated 9 hours agofrom:fb9c6d1cdd. Checks:1 OK, 7 NOTE. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKFeb 05 2025
R-4.5-winNOTEFeb 05 2025
R-4.5-macNOTEFeb 05 2025
R-4.5-linuxNOTEFeb 05 2025
R-4.4-winNOTEFeb 05 2025
R-4.4-macNOTEFeb 05 2025
R-4.3-winNOTEFeb 05 2025
R-4.3-macNOTEFeb 05 2025

Exports:counts_matrix_from_assaycreate_bugreportcreate_bugreport_from_seuratcreate_hdf5create_loupecreate_loupe_from_seuratread_feature_ids_from_tsvselect_assayselect_clustersselect_projectionssetupvalidate_barcodesvalidate_clustersvalidate_count_matvalidate_projections

Dependencies:abindaskpassbase64encBHbitbit64bitopsbslibcachemcaToolscliclustercodetoolscolorspacecommonmarkcowplotcpp11crayoncrosstalkcurldata.tabledeldirdigestdotCall64dplyrdqrngevaluatefansifarverfastDummiesfastmapfitdistrplusFNNfontawesomefsfuturefuture.applygenericsggplot2ggrepelggridgesglobalsgluegoftestgplotsgridExtragtablegtoolshdf5rherehighrhtmltoolshtmlwidgetshttpuvhttricaigraphirlbaisobandjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevalleidenbaselifecyclelistenvlmtestmagrittrMASSMatrixmatrixStatsmemoisemgcvmimeminiUImunsellnlmeopensslparallellypatchworkpbapplypillarpkgconfigplotlyplyrpngpolyclipprogressrpromisespurrrR6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppProgressRcppTOMLreshape2reticulaterlangrmarkdownROCRrprojrootRSpectraRtsnesassscalesscattermoresctransformSeuratSeuratObjectshinysitmosourcetoolsspspamspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstringistringrsurvivalsystensortibbletidyrtidyselecttinytexutf8uwotvctrsviridisLitewithrxfunxtableyamlzoo