Package: loupeR 1.1.5

Eric Siegel

loupeR: Converts Seurat objects to 10x Genomics Loupe files

Converts Seurat objects to 10x Genomics Loupe files. This is a second line to make the package checker not complain.

Authors:Eric Siegel [aut, cre]

loupeR_1.1.5.tar.gz
loupeR_1.1.5.zip(r-4.7-any)loupeR_1.1.5.zip(r-4.6-any)loupeR_1.1.5.zip(r-4.5-any)
loupeR_1.1.5.tgz(r-4.6-any)loupeR_1.1.5.tgz(r-4.5-any)
loupeR_1.1.5.tar.gz(r-4.7-any)loupeR_1.1.5.tar.gz(r-4.6-any)
loupeR_1.1.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
loupeR/json (API)

# Install 'loupeR' in R:
install.packages('loupeR', repos = c('https://blaserlab.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/10xgenomics/louper/issues

On CRAN:

Conda:

10xgenomicssingle-cell-genomics

6.47 score 161 stars 1 packages 152 scripts 15 exports 145 dependencies

Last updated from:b1cba07374. Checks:7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-develNOTE314
source / vignettesOK256
linux-releaseNOTE309
macos-releaseNOTE202
macos-oldrelNOTE181
windows-develNOTE204
windows-releaseNOTE207
windows-oldrelNOTE198
wasm-releaseOK214

Exports:counts_matrix_from_assaycreate_bugreportcreate_bugreport_from_seuratcreate_hdf5create_loupecreate_loupe_from_seuratread_feature_ids_from_tsvselect_assayselect_clustersselect_projectionssetupvalidate_barcodesvalidate_clustersvalidate_count_matvalidate_projections

Dependencies:abindaskpassbase64encBHbitbit64bitopsbslibcachemcaToolscliclustercodetoolscommonmarkcowplotcpp11crosstalkcurldata.tabledeldirdigestdotCall64dplyrdqrngevaluatefarverfastDummiesfastmapfitdistrplusFNNfontawesomefsfuturefuture.applygenericsggplot2ggrepelggridgesglobalsgluegoftestgplotsgridExtragtablegtoolshdf5rherehighrhtmltoolshtmlwidgetshttpuvhttricaigraphirlbaisobandjquerylibjsonliteKernSmoothknitrlabelinglaterlatticelazyevallifecyclelistenvlmtestmagrittrMASSMatrixmatrixStatsmemoisemimeminiUInlmeopensslotelparallellypatchworkpbapplypillarpkgconfigplotlyplyrpngpolyclipprogressrpromisespurrrR6RANNrappdirsRColorBrewerRcppRcppAnnoyRcppArmadilloRcppEigenRcppHNSWRcppProgressRcppTOMLreshape2reticulaterlangrmarkdownROCRrprojrootRSpectraRtsneS7sassscalesscattermoresctransformSeuratSeuratObjectshinysitmosourcetoolsspspamspatstat.dataspatstat.explorespatstat.geomspatstat.randomspatstat.sparsespatstat.univarspatstat.utilsstringistringrsurvivalsystensortibbletidyrtidyselecttinytexutf8uwotvctrsviridisLitewithrxfunxtableyamlzoo