{ "_id": "6a11703bacfb0bcc41cf6a24", "Package": "SeuratDisk", "Type": "Package", "Title": "Interfaces for HDF5-Based Single Cell File Formats", "Version": "0.0.0.9021", "Date": "2023-03-16", "Authors@R": "c(\nperson(given = 'Paul', family = 'Hoffman', email = 'phoffman@nygenome.org', role = c('aut', 'cre'), comment = c(ORCID = '0000-0002-7693-8957')),\nperson(given = 'Rahul', family = 'Satija', email = 'rsatija@nygenome.org', role = 'ctb', comment = c(ORCID = '0000-0001-9448-8833'))\n)", "Description": "The h5Seurat file format is specifically designed for the\nstorage and analysis of multi-modal single-cell and\nspatially-resolved expression experiments, for example, from\nCITE-seq or 10X Visium technologies. It holds all molecular\ninformation and associated metadata, including (for example)\nnearest-neighbor graphs, dimensional reduction information,\nspatial coordinates and image data, and cluster labels. We also\nsupport rapid and on-disk conversion between h5Seurat and\nAnnData objects, with the goal of enhancing interoperability\nbetween Seurat and Scanpy.", "URL": "https://mojaveazure.github.io/seurat-disk/,\nhttps://github.com/mojaveazure/seurat-disk", "BugReports": "https://github.com/mojaveazure/seurat-disk/issues", "License": "GPL-3 | file LICENSE", "Encoding": "UTF-8", "RoxygenNote": "7.2.3", "Remotes": [ "satijalab/seurat-data" ], "Collate": "'zzz.R' 'GetObject.R' 'AssembleObject.R' 'AppendData.R'\n'TestObject.R' 'TestH5.R' 'h5info.R' 'scdisk.R' 'h5Seurat.R'\n'Connect.R' 'PadMatrix.R' 'sparse_matrix.R' 'Transpose.R'\n'Convert.R' 'LoadH5Seurat.R' 'loom.R' 'loom_bindings.R'\n'LoadLoom.R' 'ReadH5.R' 'WriteH5Group.R' 'SaveH5Seurat.R'\n'SaveLoom.R' 'h5Seurat_bindings.R'", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "cmake libglpk-dev make libhdf5-dev libicu-dev\nlibpng-dev libuv1-dev libxml2-dev libssl-dev python3 zlib1g-dev", "Repository": "https://blaserlab.r-universe.dev", "Date/Publication": "2023-11-04 15:33:03 UTC", "RemoteUrl": "https://github.com/mojaveazure/seurat-disk", "RemoteRef": "HEAD", "RemoteSha": "877d4e18ab38c686f5db54f8cd290274ccdbe295", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-23 09:10:26 UTC", "User": "root" }, "Author": "Paul Hoffman [aut, cre] (ORCID:\n),\nRahul Satija [ctb] (ORCID: )", "Maintainer": "Paul Hoffman ", "MD5sum": "66d722eddeecad515db54a43a597e5ab", "_user": "blaserlab", "_type": "src", "_file": "SeuratDisk_0.0.0.9021.tar.gz", "_fileid": "31b195223d288b7394d3fd8676dd9452c361c2964239a5dcc6ee75164f2dc4a2", "_filesize": 265703, "_sha256": "31b195223d288b7394d3fd8676dd9452c361c2964239a5dcc6ee75164f2dc4a2", "_created": "2026-05-23T09:10:26.000Z", "_published": "2026-05-23T09:15:39.552Z", "_distro": "noble", "_jobs": [ { "job": 77511534337, "time": 253, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7175884048" }, { "job": 77511534321, "time": 260, "config": 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"Project", "Project.h5Seurat", "Project<-.h5Seurat", "Stdev.h5Seurat" ] }, { "page": "h5Seurat-class", "title": "A class for connections to h5Seurat files", "topics": [ "h5Seurat", "h5Seurat-class" ] }, { "page": "LoadH5Seurat", "title": "Load a saved 'Seurat' object from an h5Seurat file", "topics": [ "as.Seurat", "as.Seurat.h5Seurat", "LoadH5Seurat", "LoadH5Seurat.character", "LoadH5Seurat.H5File", "LoadH5Seurat.h5Seurat" ] }, { "page": "LoadLoom", "title": "Loom-file Loading", "topics": [ "as.Seurat", "as.Seurat.loom", "LoadLoom", "LoadLoom.character", "LoadLoom.H5File", "LoadLoom.loom" ] }, { "page": "loom-bindings", "title": "Seurat binding for loom files", "topics": [ "DefaultAssay", "DefaultAssay.loom", "dim", "dim.loom", "loom-bindings" ] }, { "page": "loom-class", "title": "A class for connections to loom files", "topics": [ "loom", "loom-class" ] }, { "page": "ReadH5", "title": "Load data from an HDF5 File", "topics": [ "as.array", "as.array.H5D", "as.data.frame", "as.data.frame.H5D", "as.data.frame.H5Group", "as.factor", "as.factor,H5Group-method", "as.list", "as.list,H5Group-method", "as.logical", "as.logical.H5D", "as.matrix", "as.matrix.H5D", "as.matrix.H5Group", "as.sparse", "as.sparse.H5D", "as.sparse.H5Group", "dimnames", "dimnames.H5D", "ReadH5" ] }, { "page": "RegisterSCDisk", "title": "Get and Register 'scdisk' Subclasses", "topics": [ "GetSCDisk", "RegisterSCDisk" ] }, { "page": "SaveH5Seurat", "title": "Save a 'Seurat' object to an h5Seurat file", "topics": [ "as.h5Seurat", "as.h5Seurat.default", "as.h5Seurat.H5File", "as.h5Seurat.Seurat", "SaveH5Seurat", "SaveH5Seurat.default", "SaveH5Seurat.Seurat" ] }, { "page": "SaveLoom", "title": "Save a 'Seurat' object to a loom file", "topics": [ "as.loom", "as.loom.default", "as.loom.H5File", "as.loom.Seurat", "SaveLoom", "SaveLoom.default", "SaveLoom.Seurat" ] }, { "page": "scdisk-class", "title": "A disk-based object for single-cell analysis", "topics": [ "scdisk", "scdisk-class" ] }, { 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