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  "Title": "A Shiny App Demonstrating a Query-Reference Mapping Algorithm\nfor Single-Cell Data",
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  "Description": "Azimuth uses an annotated reference dataset to automate\nthe processing, analysis, and interpretation of a new\nsingle-cell RNA-seq or ATAC-seq experiment. Azimuth leverages a\n'reference-based mapping' pipeline that inputs a counts matrix\nand performs normalization, visualization, cell annotation, and\ndifferential expression (biomarker discovery).",
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  "Repository": "https://blaserlab.r-universe.dev",
  "Date/Publication": "2026-05-22 18:02:24 UTC",
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  "Packaged": {
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  "Author": "Andrew Butler [aut] (ORCID: <https://orcid.org/0000-0003-3608-0463>),\nCharlotte Darby [aut] (ORCID: <https://orcid.org/0000-0003-2195-5300>),\nYuhan Hao [aut] (ORCID: <https://orcid.org/0000-0002-1810-0822>),\nAustin Hartman [aut] (ORCID: <https://orcid.org/0000-0001-7278-1852>),\nPaul Hoffman [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-7693-8957>),\nJaison Jain [ctb] (ORCID: <https://orcid.org/0000-0002-9478-5018>),\nGesmira Molla [aut] (ORCID: <https://orcid.org/0000-0002-8628-5056>),\nRahul Satija [aut] (ORCID: <https://orcid.org/0000-0001-9448-8833>),\nSatija Lab and Collaborators [fnd]",
  "Maintainer": "Paul Hoffman <phoffman@nygenome.org>",
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      "page": "Azimuth-package",
      "title": "Azimuth: A Shiny App Demonstrating a Query-Reference Mapping Algorithm for Single-Cell Data",
      "topics": [
        "Azimuth-package",
        "Azimuth"
      ]
    },
    {
      "page": "AzimuthApp",
      "title": "Launch the mapping app",
      "topics": [
        "AzimuthApp"
      ]
    },
    {
      "page": "AzimuthBridgeReference",
      "title": "Create a Seurat object compatible with Azimuth.",
      "topics": [
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    },
    {
      "page": "AzimuthData-class",
      "title": "AzimuthData",
      "topics": [
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        "AzimuthData-class"
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    {
      "page": "AzimuthReference",
      "title": "Create a Seurat object compatible with Azimuth.",
      "topics": [
        "AzimuthReference"
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    },
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    {
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      "title": "Create an 'AzimuthData' object",
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      "title": "Create A Color Map",
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      "title": "Determine a filetype based on its extension",
      "topics": [
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    },
    {
      "page": "GetColorMap",
      "title": "Get Azimuth color mapping",
      "topics": [
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        "GetColorMap.AzimuthData",
        "GetColorMap.Seurat"
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    {
      "page": "GetPlotRef",
      "title": "Get Azimuth plotref",
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        "GetPlotRef.AzimuthData",
        "GetPlotRef.Seurat"
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      "title": "Get transcripts modified from Signac::GeneActivity",
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        "RunAzimuth.Seurat"
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