Package: SeuratWrappers
Title: Community-Provided Methods and Extensions for the Seurat Object
Version: 0.4.0
Date: 2024-11-20
Authors@R: c(
  person(given = 'Andrew', family = 'Butler', email = 'abutler@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0003-3608-0463')),
  person(given = "Saket", family = "Choudhary", email = "schoudhary@nygenome.org", role = "ctb", comment = c(ORCID = "0000-0001-5202-7633")),
  person(given = 'David', family = 'Collins', email = 'dcollins@nygenome.org', role = 'ctb', comment = c(ORCID = '0000-0001-9243-7821')),
  person(given = "Yuhan", family = "Hao", email = "yhao@nygenome.org", role = "ctb", comment = c(ORCID = "0000-0002-1810-0822")),
  person(given = "Austin", family = "Hartman", email = "ahartman@nygenome.org", role = "ctb", comment = c(ORCID = "0000-0001-7278-1852")),
  person(given = 'Paul', family = 'Hoffman', email = 'nygcSatijalab@nygenome.org', role = c('aut', 'cre'), comment = c(ORCID = '0000-0002-7693-8957')),
  person(given = "Gesmira", family = "Molla", email = 'gmolla@nygenome.org', role = 'ctb', comment = c(ORCID = '0000-0002-8628-5056')),
  person(given = 'Rahul', family = 'Satija', email = 'rsatija@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0001-9448-8833')),
  person(given = 'Tim', family = 'Stuart', email = 'tstuart@nygenome.org', role = 'aut', comment = c(ORCID = '0000-0002-3044-0897'))
  )
Description: SeuratWrappers is a collection of community-provided
        methods and extensions for Seurat, curated by the Satija Lab at
        NYGC. These methods comprise functionality not presently found
        in Seurat, and are able to be updated much more frequently.
License: GPL-3 | file LICENSE
Remotes: welch-lab/liger, hms-dbmi/conos, immunogenomics/harmony,
        immunogenomics/presto, satijalab/seurat-data,
        velocyto-team/velocyto.R, SaskiaFreytag/schex@031320d,
        cole-trapnell-lab/monocle3, mojaveazure/seurat-disk,
        powellgenomicslab/Nebulosa, atakanekiz/CIPR-Package,
        prabhakarlab/Banksy
Depends: R (>= 3.5.0)
biocViews:
Imports: Banksy, BiocManager, cowplot, ggplot2, igraph, Matrix,
        methods, remotes, rsvd, Seurat (>= 5.0.0), stats, utils, rlang
Collate: 'internal.R' 'alevin.R' 'alra.R' 'banksy.R' 'cellbrowser.R'
        'cogaps.R' 'conos.R' 'fast_mnn.R' 'fast_mnn_v5.R' 'glmpca.R'
        'liger.R' 'miqc.R' 'monocle3.R' 'pacmap.R' 'presto.R' 'scVI.R'
        'tricycle.R' 'velocity.R'
Encoding: UTF-8
RoxygenNote: 7.3.2
Suggests: cipr, conos, rliger (>= 0.5.0), harmony, batchelor,
        SeuratData, SeuratDisk, velocyto.R, schex, tximport, fishpond,
        monocle3, CoGAPS, glmpca, Nebulosa, presto, flexmix, tricycle
Config/pak/sysreqs: cmake git libglpk-dev make libmagick++-dev gsfonts
        libicu-dev libpng-dev libuv1-dev libxml2-dev libssl-dev python3
        zlib1g-dev
Repository: https://blaserlab.r-universe.dev
Date/Publication: 2026-10-08 19:13:33 UTC
RemoteUrl: https://github.com/satijalab/seurat-wrappers
RemoteRef: HEAD
RemoteSha: 8728711e325f6561f4bde164e37953eb8f100e58
NeedsCompilation: no
Packaged: 2026-10-08 22:35:34 UTC; root
Author: Andrew Butler [aut] (ORCID: <https://orcid.org/0000-0003-3608-0463>),
  Saket Choudhary [ctb] (ORCID: <https://orcid.org/0000-0001-5202-7633>),
  David Collins [ctb] (ORCID: <https://orcid.org/0000-0001-9243-7821>),
  Yuhan Hao [ctb] (ORCID: <https://orcid.org/0000-0002-1810-0822>),
  Austin Hartman [ctb] (ORCID: <https://orcid.org/0000-0001-7278-1852>),
  Paul Hoffman [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-7693-8957>),
  Gesmira Molla [ctb] (ORCID: <https://orcid.org/0000-0002-8628-5056>),
  Rahul Satija [aut] (ORCID: <https://orcid.org/0000-0001-9448-8833>),
  Tim Stuart [aut] (ORCID: <https://orcid.org/0000-0002-3044-0897>)
Maintainer: Paul Hoffman <nygcSatijalab@nygenome.org>