Package: SeuratDisk
Type: Package
Title: Interfaces for HDF5-Based Single Cell File Formats
Version: 0.0.0.9021
Date: 2023-03-16
Authors@R: c(
  person(given = 'Paul', family = 'Hoffman', email = 'phoffman@nygenome.org', role = c('aut', 'cre'), comment = c(ORCID = '0000-0002-7693-8957')),
  person(given = 'Rahul', family = 'Satija', email = 'rsatija@nygenome.org', role = 'ctb', comment = c(ORCID = '0000-0001-9448-8833'))
  )
Description: The h5Seurat file format is specifically designed for the
        storage and analysis of multi-modal single-cell and
        spatially-resolved expression experiments, for example, from
        CITE-seq or 10X Visium technologies. It holds all molecular
        information and associated metadata, including (for example)
        nearest-neighbor graphs, dimensional reduction information,
        spatial coordinates and image data, and cluster labels. We also
        support rapid and on-disk conversion between h5Seurat and
        AnnData objects, with the goal of enhancing interoperability
        between Seurat and Scanpy.
URL: https://mojaveazure.github.io/seurat-disk/,
        https://github.com/mojaveazure/seurat-disk
BugReports: https://github.com/mojaveazure/seurat-disk/issues
License: GPL-3 | file LICENSE
Encoding: UTF-8
RoxygenNote: 7.2.3
Remotes: satijalab/seurat-data
Depends: R (>= 3.6.0)
Imports: cli (>= 2.0.1), crayon (>= 1.3.4), hdf5r (>= 1.3.0), Matrix
        (>= 1.2.18), methods (>= 3.6.0), R6 (>= 2.4.1), rlang (>=
        0.4.4), Seurat (>= 3.2.0), SeuratObject (>= 4.0.0), stats,
        stringi (>= 1.4.6), tools, utils, withr (>= 2.1.2)
Collate: 'zzz.R' 'GetObject.R' 'AssembleObject.R' 'AppendData.R'
        'TestObject.R' 'TestH5.R' 'h5info.R' 'scdisk.R' 'h5Seurat.R'
        'Connect.R' 'PadMatrix.R' 'sparse_matrix.R' 'Transpose.R'
        'Convert.R' 'LoadH5Seurat.R' 'loom.R' 'loom_bindings.R'
        'LoadLoom.R' 'ReadH5.R' 'WriteH5Group.R' 'SaveH5Seurat.R'
        'SaveLoom.R' 'h5Seurat_bindings.R'
Suggests: httr, knitr, rmarkdown, SeuratData
VignetteBuilder: knitr
Config/pak/sysreqs: cmake libglpk-dev make libhdf5-dev libicu-dev
        libpng-dev libuv1-dev libxml2-dev libssl-dev python3 zlib1g-dev
Repository: https://blaserlab.r-universe.dev
Date/Publication: 2023-11-04 15:33:03 UTC
RemoteUrl: https://github.com/mojaveazure/seurat-disk
RemoteRef: HEAD
RemoteSha: 877d4e18ab38c686f5db54f8cd290274ccdbe295
NeedsCompilation: no
Packaged: 2026-09-20 08:21:14 UTC; root
Author: Paul Hoffman [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-7693-8957>),
  Rahul Satija [ctb] (ORCID: <https://orcid.org/0000-0001-9448-8833>)
Maintainer: Paul Hoffman <phoffman@nygenome.org>