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# CITATION file created with {cffr} R package
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message: 'To cite package "DoubletFinder" in publications use:'
type: software
title: 'DoubletFinder: DoubletFinder is a suite of tools for identifying doublets
  in single-cell RNA sequencing data.'
version: 2.0.4
doi: 10.32614/CRAN.package.DoubletFinder
abstract: DoubletFinder identifies doublets by generating artificial doublets from
  existing scRNA-seq data and defining which real cells preferentially co-localize
  with artificial doublets in gene expression space. Other DoubletFinder package functions
  are used for fitting DoubletFinder to different scRNA-seq datasets. For example,
  ideal DoubletFinder performance in real-world contexts requires (I) Optimal pK selection
  and (2) Homotypic doublet proportion estimation. pK selection is achieved using
  pN-pK parameter sweeps and maxima identification in mean-variance-normalized bimodality
  coefficient distributions. Homotypic doublet proportion estimation is achieved by
  finding the sum of squared cell annotation frequencies. For more information, see
  our Cell Sysmtes paper https://www.cell.com/cell-systems/fulltext/S2405-4712(19)30073-0
  and our github https://github.com/chris-mcginnis-ucsf/DoubletFinder
authors:
- family-names: McGinnis
  given-names: Chris
  email: cmcginni92@gmail.com
repository: https://blaserlab.r-universe.dev
commit: cff84e94d50b1acbda5878800e30a20bd236dbd0
contact:
- family-names: McGinnis
  given-names: Chris
  email: cmcginni92@gmail.com