Package: DAseq
Type: Package
Title: Detecting regions of differential abundance between scRNA-seq
        datasets
Version: 1.0.0
Author: Jun Zhao <jun.zhao@yale.edu>
Maintainer: Jun Zhao <jun.zhao@yale.edu>
Description: DA-seq is a multiscale approach for detecting DA
        subpopulations. In contrast to clustering based approaches, our
        method can detect DA subpopulations that do not form well
        separated clusters. For each cell, we compute a multiscale
        differential abundance score measure. These scores are based on
        the k nearest neighbors in the transcriptome space for various
        values of k.
License:
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
Imports: RANN, glmnet, caret, Seurat, e1071, reticulate, ggplot2,
        cowplot, scales, ggrepel
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev python3 zlib1g-dev
Repository: https://blaserlab.r-universe.dev
Date/Publication: 2021-04-05 15:31:22 UTC
RemoteUrl: https://github.com/KlugerLab/DAseq
RemoteRef: HEAD
RemoteSha: b1f58e0028975dcbe3b38e76a01832d30401aaf6
NeedsCompilation: no
Packaged: 2026-10-10 13:34:44 UTC; root